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Volcano plot from a differential-expression table with adjustable thresholds and gene labels.
Processed locally, nothing uploadedExpression heatmap with clustering, z-scores, annotation bars and colour schemes.
Processed locally, nothing uploadedBubble plot of enrichment results: gene ratio, count and adjusted P.
Processed locally, nothing uploadedPrincipal component analysis with score plot, confidence ellipses, loadings and variance explained.
Processed locally, nothing uploadedIntersections of 2–6 sets with counts and figure.
Processed locally, nothing uploadedBox plots for two or more groups with pairwise tests annotated as stars, letters or P values.
Processed locally, nothing uploadedHeatmap of pairwise correlations within a table with significance stars.
Processed locally, nothing uploadedHypergeometric enrichment of a gene list against your own gene–term annotation (GO, pathways, custom sets), BH-adjusted.
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Volcano plot from a differential-expression table with adjustable thresholds and gene labels.
Processed locally, nothing uploadedMean expression versus log2 fold change, with significant genes highlighted.
Processed locally, nothing uploadedUp- and down-regulated genes across several comparisons in one figure.
Processed locally, nothing uploadedJoint view of two omics differential results (e.g. transcript vs protein), counted by quadrant.
Processed locally, nothing uploadedWelch or Student t-test between two groups with statistic, P value and effect size.
Processed locally, nothing uploadedt-test for paired samples.
Processed locally, nothing uploadedMann–Whitney U test between two groups.
Processed locally, nothing uploadedWilcoxon signed-rank test for paired samples.
Processed locally, nothing uploadedOne-way ANOVA with Tukey HSD post-hoc comparisons and compact letter display.
Processed locally, nothing uploadedKruskal–Wallis test with Dunn pairwise comparisons (BH-adjusted).
Processed locally, nothing uploadedChi-square test of a contingency table, optional Yates correction.
Processed locally, nothing uploadedFisher's exact test and odds ratio for a 2×2 table.
Processed locally, nothing uploadedBox plots for two or more groups with pairwise tests annotated as stars, letters or P values.
Processed locally, nothing uploadedMean ± error bars with significance annotations between groups.
Processed locally, nothing uploadedMultiple-comparison results shown as compact letters above bars.
Processed locally, nothing uploadedLines connect paired observations; paired t or signed-rank test reported.
Processed locally, nothing uploadedROC curve with AUC, confidence interval and optimal cut-off for a binary marker.
Processed locally, nothing uploadedKaplan–Meier curves with risk table and log-rank test.
Processed locally, nothing uploadedPearson or Spearman correlation and P-value matrices within a table or between two tables.
Processed locally, nothing uploadedBH, Bonferroni or Holm adjustment of a P-value column.
Bubble plot of enrichment results: gene ratio, count and adjusted P.
Processed locally, nothing uploadedBar chart of enrichment terms ordered by P value or gene count.
Processed locally, nothing uploadedMulti-ring circular view of term counts, ratios and significance.
Processed locally, nothing uploadedSide-by-side comparison of enrichment results across comparisons.
Processed locally, nothing uploadedBar chart of GO level-2 classification counts, one or more groups.
Processed locally, nothing uploadedGene counts by COG / KOG functional category.
Processed locally, nothing uploadedHypergeometric enrichment of a gene list against your own gene–term annotation (GO, pathways, custom sets), BH-adjusted.
Processed locally, nothing uploadedPre-ranked GSEA against gene sets (GMT) with permutation test and enrichment plots.
Processed locally, nothing uploadedBubble plot with a z-score summarising the up/down direction of each term.
Expression heatmap with clustering, z-scores, annotation bars and colour schemes.
Processed locally, nothing uploadedHeatmap of pairwise correlations within a table with significance stars.
Processed locally, nothing uploadedCorrelation heatmap between two tables (e.g. genes vs metabolites).
Processed locally, nothing uploadedMatrix data drawn as a circular heatmap.
Processed locally, nothing uploadedHeatmap for presence/absence (0/1) data.
Processed locally, nothing uploadedDot heatmap where size and colour encode two measures (e.g. single-cell dot plot).
Processed locally, nothing uploadedShows a variable's magnitude and its trend across samples or groups.
Processed locally, nothing uploadedHeatmap with a bar panel summarising rows or columns.
Processed locally, nothing uploadedHeatmap combined with a stacked composition panel.
Principal component analysis with score plot, confidence ellipses, loadings and variance explained.
Processed locally, nothing uploadedPrincipal coordinate analysis on Bray–Curtis, Jaccard or Euclidean distances.
Processed locally, nothing uploadedNon-metric multidimensional scaling with stress value.
Processed locally, nothing uploadedt-SNE embedding that preserves local neighbourhoods, for viewing clusters of samples or cells (up to 5,000, computed in the browser).
Processed locally, nothing uploadedUMAP embedding balancing local and global structure, faster than t-SNE (up to 5,000, computed in the browser).
Processed locally, nothing uploadedHierarchical clustering dendrogram with several distances and linkages.
Processed locally, nothing uploadedk-means clustering with an elbow plot.
Processed locally, nothing uploadedGroups genes with similar expression patterns into trend clusters and plots them.
Processed locally, nothing uploadedConstrained ordination of samples, communities and environmental variables.
Processed locally, nothing uploadedPLS-DA / OPLS-DA score plots and VIP scores for group-discriminating variables.
Grouped or stacked bars with error bars, horizontal option.
Processed locally, nothing uploadedStacked percentage bars for composition data (e.g. taxa).
Processed locally, nothing uploadedStacked bars linked across groups to show composition change.
Processed locally, nothing uploadedBar chart with a broken axis for widely ranging values.
Processed locally, nothing uploadedBar chart in polar coordinates.
Processed locally, nothing uploadedMulti-series line chart with error bands and markers.
Processed locally, nothing uploadedStacked or overlapping area chart.
Processed locally, nothing uploadedPie or donut charts of proportions, one or more groups.
Processed locally, nothing uploadedFrequency histogram with optional density curve.
Processed locally, nothing uploadedDensity curves and ridge plots for several groups.
Processed locally, nothing uploadedScatter plot with group colours, size mapping and labels.
Processed locally, nothing uploadedScatter with regression line, confidence band, R² and P value.
Processed locally, nothing uploadedRotatable three-dimensional scatter projection.
Processed locally, nothing uploadedScatter plot with marginal box plots.
Processed locally, nothing uploadedGrouped box plots with optional jittered points.
Processed locally, nothing uploadedViolin plots with optional inner box plots.
Processed locally, nothing uploadedHalf-violin, box plot and jittered points together.
Processed locally, nothing uploadedMirrored density comparison of two groups.
Processed locally, nothing uploadedNon-overlapping points showing the distribution.
Processed locally, nothing uploadedLollipop chart of values across samples.
Processed locally, nothing uploadedRadar chart of several measures across groups.
Processed locally, nothing uploadedTernary plot of three-part compositions, distribution and enrichment styles.
Processed locally, nothing uploadedEmpirical cumulative distribution for several groups.
Processed locally, nothing uploadedBubble chart encoding position, size and colour.
Processed locally, nothing uploadedPacked bubbles without axes.
Processed locally, nothing uploadedTerms sized by weight.
Processed locally, nothing uploadedNested circles for hierarchical categories.
Processed locally, nothing uploadedMulti-level sunburst chart with drill-down.
Processed locally, nothing uploadedAnimated bars re-ranked over time, frames exportable.
Processed locally, nothing uploadedFraction expressing and mean expression of genes across clusters, samples or groups.
Intersections of 2–6 sets with counts and figure.
Processed locally, nothing uploadedVenn / Euler diagram with areas proportional to set sizes.
Processed locally, nothing uploadedUpSet plot of intersections among many sets.
Processed locally, nothing uploadedSet membership shown as a network.
Processed locally, nothing uploadedMulti-level flows and quantities.
Processed locally, nothing uploadedChord diagram from a two-way table showing links and quantities.
Processed locally, nothing uploadedForce-directed weighted or directed networks with degree and community colouring.
Processed locally, nothing uploadedStreamgraph of categories changing along a gradient.
Circos plot of taxa abundance across sample groups.
Processed locally, nothing uploadedShannon, Simpson, Chao1, observed richness and group tests.
Processed locally, nothing uploadedSpecies accumulation by subsampling depth.
Processed locally, nothing uploadedVariance explained by grouping with permutation test on distances.
Processed locally, nothing uploadedNon-parametric test of between-group similarity.
Processed locally, nothing uploadedAgreement between two ordinations with permutation test.
Processed locally, nothing uploadedTaxa compared between groups (Wilcoxon / Kruskal) with an effect-size bar chart.
Processed locally, nothing uploadedWithin-omics correlation heatmap combined with a cross-omics correlation network.
Processed locally, nothing uploadedJoint and specific variation decomposition between two omics data sets.
Filter rows and columns by condition, list or regular expression.
Processed locally, nothing uploadedJoin several tables on a key column (inner, left, outer).
Processed locally, nothing uploadedSwap rows and columns.
Processed locally, nothing uploadedConvert between long and wide layouts.
Processed locally, nothing uploadedz-score, min–max, log, CPM, TPM and quantile normalisation.
Processed locally, nothing uploadedDrop rows/columns by missing fraction; mean, median or kNN imputation.
Processed locally, nothing uploadedConvert between CSV, TSV, JSON and Markdown; export to Excel.
Processed locally, nothing uploadedMean, SD, median and quantiles per column or group.
Processed locally, nothing uploadedDecode SAM/BAM alignment flags.
Processed locally, nothing uploadedConvert SVG to PNG / JPEG at a chosen resolution.
Processed locally, nothing uploadedExtract, reorder and rename columns.
Processed locally, nothing uploadedMulti-key sort, de-duplicate and count occurrences.
Processed locally, nothing uploadedGroup by columns and compute count, sum, mean, median or concatenation.
Processed locally, nothing uploadedFind and replace, or extract by regular expression, in chosen columns.
Sequence count, length distribution, N50 and GC content of a FASTA file.
Processed locally, nothing uploadedExtract sequences by ID list or sub-regions by coordinates.
Processed locally, nothing uploadedKeep sequences within a length range.
Processed locally, nothing uploadedConvert DNA ↔ RNA and reverse-complement.
Processed locally, nothing uploadedLine width, case, header cleaning, de-duplication.
Processed locally, nothing uploadedSix-frame translation, ORF finding, codon table choice.
Processed locally, nothing uploadedGC content and GC skew along a sequence.
Processed locally, nothing uploadedCodon frequency and RSCU table.
Processed locally, nothing uploadedNearest-neighbour Tm, GC%, self-complementarity and hairpin hints.
Processed locally, nothing uploadedConservation logo from aligned sequences.
Processed locally, nothing uploadedNeedleman–Wunsch global and Smith–Waterman local alignment for nucleotide and protein.
Processed locally, nothing uploadedProgressive multiple alignment (up to ~50 short sequences) with coloured display.
Processed locally, nothing uploadedNeighbour-joining tree from an alignment or distance matrix, drawn as a figure.
Processed locally, nothing uploadedRectangular or circular drawing of a Newick tree with colouring.
Processed locally, nothing uploadedFind sites by IUPAC pattern or regular expression.
Overlap, subtraction and overlap counts between two interval sets (minimum overlap fraction, same strand).
Processed locally, nothing uploadedMerge overlapping or nearby intervals, summarising columns.
Processed locally, nothing uploadedSort by chromosome and position; report coordinate and format errors.
Processed locally, nothing uploadedNearest feature and distance for each interval (e.g. nearest gene to each peak).
Processed locally, nothing uploadedCount and fraction of each interval covered by another set.
Processed locally, nothing uploadedSplit chromosomes into fixed windows and count intervals per window.
Processed locally, nothing uploadedStrand-aware flanks such as 2 kb upstream of TSS.
Processed locally, nothing uploadedExtract genes, transcripts, exons or CDS from GTF/GFF as BED.
Processed locally, nothing uploadedCounts and lengths of genes, transcripts and exons; format checks.
Processed locally, nothing uploadedEffective gene length from the union of exons (for TPM/FPKM).
Processed locally, nothing uploadedAnnotate ChIP/ATAC peaks to promoter, exon, intron and intergenic regions with summary.
Variant counts, types, Ts/Tv, quality and depth distributions, per-sample summary.
Processed locally, nothing uploadedFilter by quality, depth, allele frequency, region and type; export.
Processed locally, nothing uploadedExpand INFO fields and sample genotypes into a table.
Processed locally, nothing uploadedShared and unique variants between two VCFs with concordance.
Processed locally, nothing uploadedRead length, per-position quality, GC, N content, duplicates and adapters (up to 200 MB, in the browser).
Processed locally, nothing uploadedConvert FASTQ to FASTA, subsample, filter by length or quality.
Cross-validated performance, confusion matrix, ROC and feature importance.
Processed locally, nothing uploadedCross-validated R² and error, predicted vs observed, feature importance.
Processed locally, nothing uploadedLASSO path with cross-validated λ and selected features.
Processed locally, nothing uploadedSilhouette, Calinski–Harabasz, Davies–Bouldin, and ARI/NMI against known labels.
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